现在做肿瘤队列研究,纳入病人数量不过百都不好意思出来交流了,但是,并不意味着你的样本数量少,你的研究就没有意义,当然,部分稀有癌症本来就不可能是样本量大。
但是假如你做的并不是稀有癌症,又的确没有经费或者其它条件不允许,只能说是不到10个病人,数据也出来了,仍然是想发出去肿么办?
这里有个例子: BMC Genomics 2018 https://doi.org/10.1186/s12864-018-4906-4
文章里面写的是:
We analyzed the somatic mutational signatures in 302 paired whole-exome sequencing data of ESCC in a Chinese population for potential regulators of the mutational processes.
起初我还很意外, 什么时候有了这样一个食管癌队列,我居然不知道,而且为什么这么大的队列发一个 BMC Genomics , 后来我仔细看:
In this study, we used paired whole-exome sequencing (WES) data to identify the regulators of the somatic mutational processes in ESCC in a Chinese population by combining evidences from both germline and somatic levels [20, 23, 24, 25].The rest of 293 pairs of WES data sets were collected from published studies [20, 23, 24, 25].
也就是说,其实研究团队就9个病人的自有数据,其余的都是公共数据库,而且因为人家是大队列,原创数据,所以都发很不错的杂志。
- Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma. Am J Hum Genet. 2015;
- Genomic and molecular characterization of esophageal squamous cell carcinoma. Nat Genet. 2014;
- Identification of genomic alterations in oesophageal squamous cell cancer. Nature. 2014;
- Genetic landscape of esophageal squamous cell carcinoma. Nat Genet. 2014;46:1097–102.
然后也是走标准的肿瘤外显子流程咯:
We identified 13,854 single nucleotide variants (SNVs) and 2274 insertions and deletions (InDels) from 302 paired exonic sequences of ESCC. The median rate of the mutations is 1.11 per megabase
所以这篇文章照样发表。