生物信息学资源基本上都是欧洲的EBI的sanger研究所和美国的MIT的broad研究所创造和整理,单细胞领域也不例外:
首先看EBI的sanger研究所
链接是:https://www.ebi.ac.uk/gxa/sc/release-notes.html
最新版: Single Cell Expression Atlas release 15 – March 2021
数据详情:
- Ensembl 99 / Ensembl Genomes 46 / WormBase ParaSite 14 gene annotations.
- This release contains 184 single cell RNA-Seq studies, consisting of 5,890,292 cells, of which 4,104,531 passed our QC from 14 different species.
再看MIT的broad研究所
链接是:https://singlecell.broadinstitute.org/single_cell
326 total studies found其它单位也有一下零零散散的资源
比如美国-德克萨斯大学休斯顿健康科学中心的,链接是:https://bioinfo.uth.edu/scrnaseqdb/
scRNASeqDB database, which contains 36 human single cell gene expression data sets collected from Gene Expression Omnibus (GEO), involving 8910 cells from 174 cell groups.细分领域就更多了
SC2disease: a manually curated database of single-cell transcriptome for human diseases
链接: https://academic.oup.com/nar/article/49/D1/D1413/5917662
scREAD: A Single-Cell RNA-Seq Database for Alzheimer’s Disease
链接:https://www.sciencedirect.com/science/article/pii/S2589004220309664
This portal provides access to high quality data and web-based applications created for the benefit of the global research community.
链接:https://portal.brain-map.org/atlases-and-data/rnaseq
大家最常用的是哪些呢?或者说有哪些是我没有列出来的,你可以推荐的呢?欢迎留言哦!