TCGA各大癌症的somatic突变全景图鸟瞰

前面我们开通了明码标价专栏:

也算是一种粉丝福利吧!

但是有一些小伙伴上来就委托一些完全不需要委托的, 比如给我们一个GSE号,委托普通转录组上游分析需要我们拿到表达量矩阵, 结果人家GSE页面的supplement里面作者明明是已经上传了表达量矩阵。

再比如有人委托TCGA某癌症的somatic突变全景图相关的,其实都有非常成熟的网页工具可以弄,完全没必要花几百块钱的冤枉钱啊!

iCoMut

我这里随意拿一个癌症举例:

http://firebrowse.org/iCoMut/?cohort=BRCA

效果如下:

image-20210303182523678

全部的癌症列表如下:

ACC - Adrenocortical carcinoma
BLCA - Bladder Urothelial Carcinoma
BRCA - Breast invasive carcinoma
CESC - Cervical and endocervical cancers
CHOL - Cholangiocarcinoma
COAD - Colon adenocarcinoma
COADREAD - Colorectal adenocarcinoma
DLBC - Diffuse Large B-cell Lymphoma
ESCA- Esophageal carcinoma
GBM - Glioblastoma multiforme
GBMLGG - GBMLGG-Glioma
HNSC - Head and Neck squamous cell carcinoma
KICH - Kidney Chromophobe
KIPAN - Pan-kidney cohort (KICH+KIRC+KIRP)
KIRC - Kidney renal clear cell carcinoma
KIRP - Kidney renal papillary cell carcinoma
LAML - Acute Myeloid Leukemia
LGG - Brain Lower Grade Glioma
LIHC - Liver hepatocellular carcinoma
LUAD - Lung adenocarcinoma
LUSC - Lung squamous cell carcinoma
MESO - Mesothelioma
OV - Ovarian serous cystadenocarcinoma
PAAD - Pancreatic adenocarcinoma
PCPG - Pheochromocytoma and Paraganglioma
PRAD - Prostate adenocarcinoma
READ - Rectum adenocarcinoma
SARC - Sarcoma
SKCM - Skin Cutaneous Melanoma
STAD - Stomach adenocarcinoma
STES - Stomach and Esophageal carcinoma
TGCT - Testicular Germ Cell Tumors
THCA - Thyroid carcinoma
THYM - Thymoma
UCEC - Uterine Corpus Endometrial Carcinoma
UCS - Uterine Carcinosarcoma
UVM - Uveal Melanoma

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