Lecture4_my-script-with-perl_depth

Jimmy（jmzeng1314@outlook.com）

Keywords: coverage/bam/mpileup/exon/genome/target/liftover

Which position in genome is belong to exon?

NCBI CCDS

Which file should I process ?

Mpileup

How to write the script ?

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useful links : http://www.bio-info-trainee.com/?p=990

ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/

http://bcb.io/2015/09/17/hg38-validation/

补充一个：有效reads百分比！